| Name | Category | Organism | Program, Pipeline Name or Method Name | Source Name | Download link | |
|---|---|---|---|---|---|---|
| Genome Assembly | Other | Seriola dorsalis v1 | Masurca | Seriola dorsalis assembly version 1 in fasta format | sedor_v1.fasta.gz | |
| repeatmodeler/masked gene predictions | Genes | Seriola dorsalis v1 | repeatmodeler,repeatmasker,braker | ISU Genome Informatics Facility | repeatmodelmask_sedor_4439.gff3.gz | View on JBrowse |
| Repeatmasked | Genes | Seriola dorsalis v1 | opscan,iadhore | ISU Genome Informatics Facility | sorted.repeatmasked.sedor_4439.gff_.gz | View on JBrowse |
| Seriola dorsalis and seriola dumerili Synteny | Related species | Seriola dorsalis v1 | opscan,iadhore | ISU Genome Informatics Facility | redosedorsedumsynteny.gff_.gz | View on JBrowse |
| Seriola rivoliana genome version 1.0 | Genome structure | Seriola rivoliana v1 | Hybrid assembly (PE, MP and pacbio) done using MaSuRCA, further scaffolded using Chicago (Dovetail) libraries. | ISU Genome Informatics Facility | serriv_assembly_version_1.0.fasta.gz | |
| Seriola rivoliana genome version 1.1, with mitochondrial scaffold (unmasked) | Genome structure | Seriola rivoliana v1 | Hybrid assembly (PE, MP and pacbio) done using MaSuRCA, further scaffolded using Chicago (Dovetail) libraries. | ISU Genome Informatics Facility | serriv_assembly_version_1.1_with_mito_unmasked.fasta.gz | |
| Seriola Dorsalis NCBI Annotation Pipeline | Genes | Seriola dorsalis v1 | NCBI Gene annotations mapped with Gmap | NCBI Gene Annotations | sedorncbiannotgmap_sorted_formatted.gff_.gz | View on JBrowse |
| Seriola rivoliana genome version 1.1, with mitochondrial scaffold (masked) | Genome structure | Seriola rivoliana v1 | Hybrid assembly (PE, MP and pacbio) done using MaSuRCA, further scaffolded using Chicago (Dovetail) libraries. | ISU Genome Informatics Facility | serriv_assembly_version_1.1_with_mito_masked.fasta.gz | |
| 90 FISH SNPS and INDELS Purcell 2017 | Molecular markers (QTL) | Seriola dorsalis v1 | bwa mapping, picard, gatk,vcftools,tabix | ISU Genome Informatics Facility | serdor.all_.sort_.vcf.gz | View on JBrowse |
| Genome Annotation | Genes | Seriola dorsalis v1 | BRAKER, AUGUSTUS | Seriola dorsalis annotation version 1 in gff3 format | sedor_v1_sorted.gff3.gz | View on JBrowse |
| Seriola rivoliana annotation version 1.0 | Genes | Seriola rivoliana v1 | BRAKER was used for gene prediction, fucntional annotation using Swissport/uniprot database and Interproscan | ISU Genome Informatics Facility | serriv_annotations_version_1.0.gff_.gz | View on JBrowse |
| Seriola Dumerili Annotation | Genes | Seriola dumerili v1 | NCBI Eukaryotic Genome Annotation Pipeline | Genome assembly Sdu_1.0 | dumerili_sorted_fixed.gff3.gz | View on JBrowse |