Program, Pipeline Name or Method Name

bwa mapping, picard, gatk,vcftools,tabix

Program, Pipeline or Method version

bwa 0.7.15, picard 2.9, gatk3.6, vcftools 0.1.14,tabix 0.2.6

Source Name

ISU Genome Informatics Facility

Time Executed

June 8, 2017, midnight

Category

Molecular markers (QTL)

Description

This is the two column correspondence for the metadata in SRA. 7492 LP-5615-F 7493 LP-6188-F 7494 LP-6186-F 7495 LP-6184-F 7496 LP-5568-F 7497 LP-5031-F 7498 LP-5604-F 7499 LP-5566-M 7500 LP-5054-M 7501 LP-6126-M 7502 LP-6141-M 7503 LP-6116-M 7504 LP-5042-M 7505 LP-5624-M 7506 LP-5580-M 7507 CI798-31-F 7508 CI798-18-F 7509 CI798-13-F 7510 CI798-38-F 7511 CI798-06-F 7512 CI798-12-F 7513 CI798-09-F 7514 CI798-33-F 7515 CI798-34-M 7516 CI798-26B-M 7517 CI798-19-M 7518 CI798-29B-M 7519 CI798-48B-M 7520 CI798-28-M 7521 CI798-41-M 7522 SD682-15-F 7523 SD682-02-F 7524 SD682-08-F 7525 SD682-70-F 7526 SD682-04-F 7527 SD682-14-F 7528 SD624-90-F 7529 SD624-93-F 7530 SD682-59-M 7531 SD621-37-M 7532 SD682-62-M 7533 SD682-91-M 7534 SD621-36-M 7535 SD682-58-M 7536 SD681-78-M 7537 LP-6181-F 7538 LP-5606-F 7539 LP-6179-F 7540 LP-5061-F 7541 LP-6194-F 7542 LP-5571-F 7543 LP-6138-F 7544 LP-5044-M 7545 LP-6176-M 7546 LP-6187-M 7547 LP-5572-M 7548 LP-5620-M 7549 LP-6133-M 7550 LP-5045-M 7551 LP-6185-M 7552 CI798-07-F 7553 CI798-23-F 7554 CI798-24-F 7555 CI798-15-F 7556 CI798-08-F 7557 CI798-11-F 7558 CI798-17-F 7559 CI798-27-M 7560 CI798-05-M 7561 CI798-39-M 7562 CI798-47-M 7563 CI798-10-M 7564 CI798-35-M 7565 CI798-30-M 7566 CI798-40-M 7567 SD681-76-F 7568 SD682-03-F 7569 SD705-10-F 7570 SD705-07-F 7571 SD682-89-F 7572 SD682-88-F 7573 SD705-04-F 7574 SD682-16-M 7575 SD681-74-M 7576 SD705-09-M 7577 SD682-98-M 7578 SD682-63-M 7579 SD682-87-M 7580 SD681-77-M 7581 SD705-05-M

File

serdor.all_.sort_.vcf.gz

Index

serdor.all_.sort_.vcf.gz.tbi